Chapter 1 Getting Started

1.1 Lab Group Directory

/mnt/vstor/SOM_PQHS_LXZ716

1.2 Key Areas in CWRU HPC OnDemand Web Portal

The following figures provide a visual guide to key areas within the CWRU HPC OnDemand Web Portal that users frequently interact with.

• Home Directory:The location of the Home Directory in the CWRU HPC OnDemand Web Portal.

• Active Jobs: Where to view currently running jobs that have been submitted to SLURM.

• Pioneer Shell Access: Where to access the Pioneer Shell to run your code on the HPC cluster.

1.3 Bioinformatics Package Installation Status

This document lists various bioinformatics packages, their installation status, and links to their respective sections.

Package	Link to Section	Installed
Woltka	Woltka	Yes
Samtools	Samtools	Yes
Qiime 2	Qiime 2	Yes
Kraken2	Kraken2	Yes